rs50247211 SNP Detail

Summary

• ID
  rs50247211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG GGTGCAAATA CTTTCTAGTT
  Y
  CTACATTTAT AAATTATTAT AGAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320667835	CHEV_3_14874054	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50247211					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939114 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1673 bp downstream
Rr374551	regulatory region 374551	1630 bp upstream
Rr397608	regulatory region 397608	348 bp upstream
Rr573714	regulatory region 573714	415 bp proximal
Rr573715	regulatory region 573715	511 bp proximal
Rr573716	regulatory region 573716	1054 bp proximal
Tssr28459	transcription start site region 28459	1986 bp downstream
Tssr28460	transcription start site region 28460	1900 bp downstream
Tssr28461	transcription start site region 28461	1844 bp downstream
Tssr28462	transcription start site region 28462	1807 bp downstream
Tssr28463	transcription start site region 28463	1756 bp downstream
Tssr28464	transcription start site region 28464	1715 bp downstream
Tssr28465	transcription start site region 28465	1576 bp downstream
Tssr32654	transcription start site region 32654	1517 bp upstream