rs50247001 SNP Detail

Summary

• ID
  rs50247001
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58962122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTGAGTG GGTTTGTGAT
  TCCTGTTATG GTCACAACAC TATCGTTCAC TTTTCCTGGC TATAAAACAG AGATGACTGA
  CAGCACTCTG TGGGAATGAG GAGGATCGAT ATTTCATGAA AGGAACCCCT ACCTCTAAAG
  TGTTTAGAAC AACCCATGGC ACACAGTCAG CATAGACTGT TAGTATGGTA CAACCGCTAT
  S
  AGGGGCACTG TCATGACTAG CCAGCATGGT TGATTATTTC CGGCACTACA CTGTTACCAT
  GTAGGTTTTA CTACCACATT TTGTTTAAAC TGATGTGGCC TGGGACACTG GAAGATGCCT
  TTTCTCCTCC CTGCGGGGAG GTGATTGCTG CTGATGTATG CATGTGATGG ATTCAGGCTC
  TCGAACCCAG CAAGCCTTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60415567	NES15911313	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50247001					SNP	G	G	G	G	G	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415567	NES15911313	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58962122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Med12l	mediator complex subunit 12-like			Intron
				Noncoding-Transcript-Variant
Rr577300	regulatory region 577300			200 bp proximal