rs50246977 SNP Detail

Summary

• ID
  rs50246977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153365883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAACGAA AGAGGGGGCA
  GGAGCAGAGC AAGGCCTGAG CCTGAGCAGA GGCAGCGGGT GAGCTCACTC ACTCAGCCTA
  CATCTGAAGC ATCGGTCATC CTAGGTGCCC CACAGCAGGA CCAGATCAGT GGGCAAGACA
  GCAGGCTGGG CCAGTGGAGC ATGGTGGTAG GAGCGGCTAC AGTTTAACAC TGAGAGTTGG
  R
  ACCTAGGAAA CACCGTAGCA AGTTGTTCTA AGAACAGGGT CTTGAGTATG AGCTCAAGGA
  TGCCAGACTT GATTCACAGA CATCACTGAG CCAAGGGAGC TTCTCTGAGA AATGTCTGTG
  AGAGGCAGGG CAGAAAAAGG GAGCCATCAG GTTAGCTCCA GCTGGGGTGA TTCATCTTCG
  GATGCATAAG ACCCCGTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110588	ENSMUSSNP6356019	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50246977					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153365883 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587719	regulatory region 587719			1386 bp distal
Rr587720	regulatory region 587720			1653 bp distal
Rr587721	regulatory region 587721			107 bp distal
Rr587722	regulatory region 587722			1756 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant