rs50246352 SNP Detail

Summary

• ID
  rs50246352
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88725720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTTTTTAG AGGGTAGGAG GTGGACCTGA AATATTAAAC
  CCTCTGGCTC TATAGGCCTC AGGTTGGGAG AGAGGAATTT CCCATCTCAT GTTTCATCAA
  S
  ATGGAAGCCT TTTGTCCTAG GTTCCATACA AGCTGCTAAC TATAGTGTTT GTTTCAAAAG
  TTCCTTCTCT CTAAAAGTCC CTTCTTTTTT ACGTATTAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146940328	ENSMUSSNP6009812	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss321203823	CHEV_4_88453387	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50246352					SNP	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88725720 () rs orientation: forward

Symbol	Name	Function Class
Gm13288	predicted gene 13288	mRNA-UTR
Rr595116	regulatory region 595116	1942 bp distal
Rr595117	regulatory region 595117	1979 bp distal
Rr595118	regulatory region 595118	1466 bp distal
Rr595119	regulatory region 595119	1320 bp distal
Rr595120	regulatory region 595120	978 bp distal