rs50246196 SNP Detail

Summary

• ID
  rs50246196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137096360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGGGAT CCATGGGTAT
  CATACACACT TGAAGTGCAC ACATATACTT GTAGGTTAGA GACACACACA TGAATTTTAA
  ATAGCAATAA TAAAAGGATC TGGGTGCTGC TCAGTGGCAC AATGCTTGCC TAGCATGCAA
  GAAACCCAGG ATTCAGTCAC CAGGAAGGGA TAAAGGGAGC CAGGCATGGC AGTAAACACC
  Y
  GTACTCCCAG CCCTTTGGAA GCTGAAGCAG AATCATAAAC TCTAAGCCAG CCGGCACATT
  AGGGTGTGAG CCAGTCAAAA GAAAAGGAGA GAAAGTGGGG AGAAGGGGAA AAGAAAGCTG
  GAGGTGCTGC TGGCACCCGT AATCCTAGGA CAAGGCCAAA GGATAAGGAC TTCAAGGTCA
  CCTATGACTA CATAGCAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147603675	ENSMUSSNP2763025	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321363413	CHEV_4_136924964	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50246196					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137096360 () rs orientation: forward

Symbol	Name	Function Class
Gm69272	predicted gene, 69272	within coordinates
Gm69290	predicted gene, 69290	582 bp downstream
Rr602600	regulatory region 602600	1035 bp distal
Rr602601	regulatory region 602601	517 bp distal
Rr602602	regulatory region 602602	985 bp proximal
Rr602603	regulatory region 602603	1490 bp proximal