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rs50246016 SNP Detail
Summary
  • ID
    rs50246016
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:89156569 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                        C AAGCGGTGCA ACAACACCAT GTCTTGTGGG ACCAGATCTT
    CCTATGGTGT TAATAGTCCC TTCCCTTCCC ACCATATGCC ACCTCCTCTG TCCCCTCCCC
    S
    CCATTATTTT TTTCAAAGCT TTTTTTATTT ATTATATGTA ACTACACTGT AGCTGTCTTC
    AGACACACCA GAAGAGGGCA TCAGATCTCA TTACGGATGG T                    
    
    S = C/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
ss135474296 ENSMUSSNP6868430 ENSEMBL ENSEMBL_Sanger f SNP C C C G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
MSM/Ms
rs50246016 SNP C C C G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:89156569 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Krtcap2 keratinocyte associated protein 2 Intron
Rr580001 regulatory region 580001 991 bp proximal
Rr580002 regulatory region 580002 1072 bp proximal
Rr580003 regulatory region 580003 1289 bp proximal
Rr580004 regulatory region 580004 1333 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory