rs50246016 SNP Detail

Summary

• ID
  rs50246016
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89156569 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAGCGGTGCA ACAACACCAT GTCTTGTGGG ACCAGATCTT
  CCTATGGTGT TAATAGTCCC TTCCCTTCCC ACCATATGCC ACCTCCTCTG TCCCCTCCCC
  S
  CCATTATTTT TTTCAAAGCT TTTTTTATTT ATTATATGTA ACTACACTGT AGCTGTCTTC
  AGACACACCA GAAGAGGGCA TCAGATCTCA TTACGGATGG T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135474296	ENSMUSSNP6868430	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50246016					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89156569 () rs orientation: forward

Symbol	Name	Function Class
Krtcap2	keratinocyte associated protein 2	Intron
Rr580001	regulatory region 580001	991 bp proximal
Rr580002	regulatory region 580002	1072 bp proximal
Rr580003	regulatory region 580003	1289 bp proximal
Rr580004	regulatory region 580004	1333 bp proximal