rs50243971 SNP Detail

Summary

• ID
  rs50243971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146127798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATAATTT GGAGCTTAGG
  TATTTAAGAT TTTGGTCTTT TTACAGATTG TAAGTGTTGG ACCCTACAGT CGTTTGGTTA
  GCAGACTTCC TCCTTCGGTC ACCGCAGACA GCTTCCTTTG CTGTGATTAC CCTTCTGACT
  CCCTGTGATC TTGCCTGACC CTTCTTGAGG TCGCTTTCTG TGTCACTGGA ACCTTTCCCG
  Y
  CAGCTCCTTG CCCGTCCCTC CGTCTGAAAT GCTTCCTGTT TTCTCCTCCG GCAGCTTCAC
  AGTTTGTGGT CTTGCACTAA GCTCCTTGAT CCATTTGGAA TTAAAGTTTG CACAGGTGAG
  AGGAGGGCCC TCCTCCTCCT TCCCGGCCTG GGAATGGCCT GTCTTCTCTC CAGTGTATAT
  TTTTTAGATC ATGGTTAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136044138	ENSMUSSNP5545175	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321010285	CHEV_3_146085007	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50243971					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146127798 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	1850 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron