rs50239475 SNP Detail

Summary

• ID
  rs50239475
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34285074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTCAGGGA AGGGAAAATC
  AGCATAGACT CCAGGCTCAG AATTGTTGCA CAGCTAGCTC TATAAGCAAG CCAAGCGCAG
  CCTCCATCAC TGCCCATTAA GTCCTTTTAT CTTCTCTCTG AACATCATGT GTCCTCCGTG
  AGCCTTGCCT CAGCACATGT CTTGTCTCAG CACAAGTGTC TATCTCAGCC CGAGTCTGCA
  R
  AGTCAGCAAG AAACTGCAGC ACACCACCAG AAGTTTTTGG TGCATTTCTC TCTATGGAGT
  CCTGACAAAT GCAGATCAAC TATGTGATGT AAGGTAGCCC AATACATGCA TGTCATTAGC
  AAAGAATTCT TCGTCATGTG TCCTTGCATA TGCCTGCTTT AGCAGAACAT CCTCTCTTCT
  GTGTCTGCTT CAGCCAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134764586	ENSMUSSNP1498504	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50239475					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34285074 () rs orientation: forward

Symbol	Name	Function Class
Rr575112	regulatory region 575112	847 bp proximal
Rr575113	regulatory region 575113	1129 bp proximal