rs50235833 SNP Detail

Summary

• ID
  rs50235833
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138222099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCC TTTTGCCTGC ATTGGATCTC
  R
  CGGCTGGCCT TGCTTCCTGT AAAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147648576	ENSMUSSNP3423427	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321374275	CHEV_4_138050703	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50235833					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138222099 () rs orientation: forward

Symbol	Name	Function Class
Gm32549	predicted gene, 32549	1691 bp upstream
Rr602944	regulatory region 602944	746 bp distal
Rr602945	regulatory region 602945	within coordinates
Rr602946	regulatory region 602946	851 bp proximal
Rr602947	regulatory region 602947	1149 bp proximal
Rr602948	regulatory region 602948	1451 bp proximal
Rr602949	regulatory region 602949	1754 bp proximal