rs50232915 SNP Detail

Summary

• ID
  rs50232915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:102111157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAC ACTTCTCTGG GCGCGCTGCT
  Y
  GGGGCAGTTC AATGGCTGCA GGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135554844	ENSMUSSNP2087656	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50232915					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102111157 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13625	CpG island 13625			within coordinates
Gm16160	predicted gene 16160			within coordinates
Rr582207	regulatory region 582207			within coordinates
Rr582208	regulatory region 582208			112 bp proximal
Rr582209	regulatory region 582209			215 bp proximal
Rr582210	regulatory region 582210			842 bp proximal
Tssr34830	transcription start site region 34830			735 bp downstream
Vangl1	VANGL planar cell polarity 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant