rs50230753 SNP Detail

Summary

• ID
  rs50230753
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40752338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAACACT GATAGCTACT
  TTAATGACAT CATATTTGCC AGTTTGAAGA GTATTTGTGG CTTATAGAAG ATCCAAAAAA
  AAAAAAGATG TAGTAGAGAA AAAGTTATGC TAAGAACATA CAAAAAGGTA AGTGAAAGGC
  TAAGAAAAAA TGATTCTACA GGTTAAAAAA ATGTTTCTGT AAATATGAGT AGTATAAATT
  W
  AAACTTTAGA GCATAAAGAG GGTATTCTTT GATTATAGAG AATTCATTAG AAATATATAT
  GAGCTCTGAC ACAGGTCTGA GAACATAGAC TGCAGCTGAC AATGAAGTGA TAACACAAGG
  CAAATATATA AAGCAACAAA AAGTAACGAG GGCATGGATT TATATCAACA GACTATTAAT
  GGGCTCTGAT AAACTTTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60400530	NES15892933	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50230753					SNP	A	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400530	NES15892933	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40752338 () rs orientation: forward

Symbol	Name	Function Class
4921509J17Rik	RIKEN cDNA 4921509J17 gene	within coordinates
Cpgi13112	CpG island 13112	1824 bp proximal
Hspa4l	heat shock protein 4 like	1800 bp downstream
Rr397650	regulatory region 397650	480 bp upstream
Rr575856	regulatory region 575856	676 bp proximal
Rr575857	regulatory region 575857	763 bp proximal
Rr575858	regulatory region 575858	1626 bp proximal