rs50230098 SNP Detail

Summary

• ID
  rs50230098
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:67474996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACAGGGC TTGATATACA
  GCCCTGCCTG GCTTTGAAAT GTTGCTCCTC ACCCCTCTCC TTTTTAAAGG CCTAAAGCAG
  GAACCAATTA CGATGTTTAG CTTTGAAGCT TGGGGGAGGA ATGGTGGAGG TGAGAACCGA
  ACCGGACCGA ACCGAAGGCT TCTCAGGTCA AGCAGATCAC CAGCCTTTCT GACATGCTCG
  M
  CAAACCAGGT CACTTAATGT GTACATATGC TGAAATACGT ACAGATCAGA GGGTGATAAC
  CGTGCGTGTG GGGTTAGGAG GGGGAGGAGT TGAACCATAC GTAACTCTGC ACTGTTGCAA
  TTCTTATATT CTGACAAAAC CATGCTAAGG GAGGAGACAT TTATTTTGGC TCACAGTTTG
  AAGGGATGCA GTCTGTCATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135258631	ENSMUSSNP2426692	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50230098					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67474996 () rs orientation: forward

Symbol	Name	Function Class
Rr577945	regulatory region 577945	1334 bp distal
Rr577947	regulatory region 577947	442 bp proximal
Rr577948	regulatory region 577948	810 bp proximal