rs50229065 SNP Detail

Summary

• ID
  rs50229065
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68954429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCCA CGAGGTTGGG ACGTTATCTC
  S
  AAACATACAT AAAAAGCATG TTCTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135264712	ENSMUSSNP5933242	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320791807	CHEV_3_68851018	CHEVERUD	SCREENING_POP	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50229065					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68954429 () rs orientation: forward

Symbol	Name	Function Class
Gm65005	predicted gene, 65005	729 bp downstream
Rr578119	regulatory region 578119	1964 bp distal
Rr578121	regulatory region 578121	843 bp distal
Rr578122	regulatory region 578122	1732 bp distal
Rr578123	regulatory region 578123	48 bp distal
Tssr29530	transcription start site region 29530	1960 bp downstream