rs50226397 SNP Detail

Summary

• ID
  rs50226397
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133847695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAG CTTGTCCCAG CCTACAGAGC
  A
  CACAAGCAGC AGCCCTGGCT GTGTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147518370	ENSMUSSNP2982966	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321345422	CHEV_4_133676299	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50226397					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133847695 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr367738	regulatory region 367738			within coordinates
Rr370577	regulatory region 370577			1150 bp upstream
Rr601565	regulatory region 601565			817 bp distal
Rr601566	regulatory region 601566			484 bp distal
Rr601567	regulatory region 601567			1093 bp proximal
Rr601568	regulatory region 601568			1414 bp proximal
Rr601569	regulatory region 601569			1764 bp proximal
Rr601570	regulatory region 601570			1882 bp proximal
Tssr39530	transcription start site region 39530			1881 bp downstream
Tssr39531	transcription start site region 39531			1779 bp downstream
Tssr39532	transcription start site region 39532			1435 bp upstream
Tssr39533	transcription start site region 39533			1458 bp upstream
Ubxn11	UBX domain protein 11			Intron
				Noncoding-Transcript-Variant