rs50223359 SNP Detail

Summary

• ID
  rs50223359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81668317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAATACTC TATTCTGCTC
  TTCAGCGTAG ATTCTCACGC GTGCCTTACA GAAATAGTAG CTTTATAACA AAATAACTTT
  ATAACAAACT TGCAAACTGA TTAGTCTAGA ATGCTGTCAC ATAGTGAGAA AGATATTTGC
  ATGAGAGCTA GACTCCAGCT TTGTGAAGTT GCTTTAGGAA CACTTGAATA ATGAATGTGC
  Y
  TGGGATAATC TGTGCTTGCT AGAGGTGAGC AGAAGCTTGC TTCAGTTTCA GCTGCCACAT
  TCTACTCGAA AGTGAAAGCT GATTTGCATG CTGGCTATGA GCTGTGGATC TTGCACAGAC
  TGCCTAACAA ACCAGTAAAA GCACACTAAA CAAAACCACC TGGCTGACTT TCATGATGTC
  ACTAGTTCAC TGTGGGAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60421972	NES15919488	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50223359					SNP	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421972	NES15919488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81668317 () rs orientation: forward

Symbol	Name	Function Class
Rr578714	regulatory region 578714	within coordinates