rs50217246 SNP Detail

Summary

• ID
  rs50217246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19528660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTAAGTA GAGGGTGGGC
  TACTTGAATT GCAAATGCAT GGGAGAGTGA CTTATTCAGT CAGTCTAAGA GAGAAAAACC
  TTTATCAATT GTGTATGTTT AAAGGAGGGA CAAAAATAAG AATCTGCAAC CTATGGTGGG
  CAGAAGTCTA CAGTGGGTAC TACAGTCGTA ATTTGTCTTC TGAGCACTGT GCATCAGTTT
  R
  TGTTAAATCC ATTCAACATT CGAGTCTCCC TAATAGTTTT ATTTTTATTT TTTACATTTC
  CCTACAGACA AACGCACTGA CTCAGACTTT TCTCCCAAGC CTACTATTTT CCTTCCTTCT
  GCTGCTGAAA CAAATCTCCA TAAGGCTGGG ACCTACCTTT GTCTCCTTGA AAAGTTCTTT
  CCTGAAGTCA TAAGGGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626593	NES15515268	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50217246					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626593	NES15515268	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19528660 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	68 bp upstream
Tssr118549	transcription start site region 118549	1751 bp downstream
Tssr118550	transcription start site region 118550	1031 bp downstream
Tssr118551	transcription start site region 118551	257 bp downstream
Tssr118552	transcription start site region 118552	1466 bp upstream
Tssr121589	transcription start site region 121589	1224 bp upstream
Tssr121590	transcription start site region 121590	142 bp upstream
Tssr121591	transcription start site region 121591	699 bp downstream
Tssr121592	transcription start site region 121592	1279 bp downstream