rs50215946 SNP Detail

Summary

• ID
  rs50215946
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:62449107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATCAAC AGATAAAACA
  TAATTATGCA GTTTTCAGCT AAACTGTCAT CAATTTGCCA TGTTGTTTTA GATTTCTATT
  ATTATTTCCT GATATGCAGG TCTCCATACA TTTGTTCTCC TGAAACCCAA ATCAAAATAT
  ATTTATTACA AGTAGTTCCA TAATATGCAT TTTTAAAATA AAAAATGCTG ACAAAGTAAG
  W
  GCTAACATAG TGATTTCATA AACGCTAGAG TAATTTTATT ATGACACATA TCTTGTTTTA
  GATATATTTT GTTCAGAAGG GACCACGTTT TCTCATCTTC TTGGCCAAGA GGAAAGGATC
  TAAAATGTAC TGCTCACAAA GTGGAATGTA GGAAAACAAA TATTATTTCA ACTTAAACAC
  CCACCTGTGC TTTACAGCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146703076	ENSMUSSNP4734822	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
ss320320706	CHEV_2_62456820	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50215946					SNP	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:62449107 () rs orientation: forward

Symbol	Name	Function Class
Gm39839	predicted gene, 39839	1075 bp upstream
Ifih1	interferon induced with helicase C domain 1	Intron
Rr557887	regulatory region 557887	651 bp distal
Rr557888	regulatory region 557888	within coordinates
Rr557889	regulatory region 557889	983 bp proximal
Tssr24302	transcription start site region 24302	1499 bp upstream
Tssr24303	transcription start site region 24303	1472 bp upstream
Tssr24304	transcription start site region 24304	1416 bp upstream
Tssr24305	transcription start site region 24305	1402 bp upstream