rs50213563 SNP Detail

Summary

• ID
  rs50213563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149333720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTTA AAGCTCTGAG GCTAGAAGGC
  Y
  GCCCCTGTGC CTTGATGACA TCACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144701035	ENSMUSSNP1320582	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50213563					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149333720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17095	CpG island 17095	1351 bp proximal
Gm20488	predicted gene 20488	within coordinates
Medag	mesenteric estrogen dependent adipogenesis	1494 bp upstream
Rr625496	regulatory region 625496	1004 bp proximal
Tssr49905	transcription start site region 49905	1536 bp upstream
Tssr49906	transcription start site region 49906	1843 bp upstream