rs50212818 SNP Detail

Summary

• ID
  rs50212818
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33973288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCATCTA CACTTACTAG
  CGCCCCCTGG TGGCGGCACA CAGCCGCTAA ACCCGCGTTT ACACAGGCTT CTGTTCTCAG
  AAGCTGCCCT TCCTTAGAAA TGCACTTAGG TACGGTTCAG GACAGGCCCG GAGCTCCCTC
  CAGACTCCCT GCCCCAGTTG CTCTAAATCT GTCAATAGAG ACTTATTGTC CTCCACCCCG
  Y
  ATCAGTGTCT CTATCAGAAT TCTTAACATT AAGTAACTGG GTTGGACAGG ATGATGATGG
  ACGCCATGAC TTATCTGTCT GTCCTTGTCC TTCAGCCTGA CTGTTTTCAC TCCTGCCTTC
  CTTCTTCCTT CTTTTCATTT TATCAATGGA GAAAGACAGG GATGGGGGTG GGTGGTACCA
  AGTAACAGAG CTGCCTTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134760372	ENSMUSSNP5926024	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50212818					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33973288 () rs orientation: forward

Symbol	Name	Function Class
Rr575083	regulatory region 575083	631 bp distal
Rr575084	regulatory region 575084	within coordinates
Rr575085	regulatory region 575085	163 bp distal