rs50212055 SNP Detail

Summary

• ID
  rs50212055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108044197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C GCCCTCTCAT CTATGACTCA TAGCCAGCAA CACACATCTG
  CATTTGCATT GACAGTTTAT TAATAACACA AGTAGATAAT ACTCCATGTA CCAATGAGCT
  Y
  TTAAGGCTTG GTCAAGATCA AACATTCCAG GATGTCTGCG AAGACCACCT ATTTTTTTTC
  TTTATTCATC AAATAGTCGA GTGACTATAA TATACCAGGC A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133494250	ENSMUSSNP919571	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50212055					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108044197 () rs orientation: forward

Symbol	Name	Function Class
Rr399805	regulatory region 399805	1736 bp downstream
Rr399806	regulatory region 399806	1216 bp downstream
Rr636030	regulatory region 636030	1917 bp distal
Rr636031	regulatory region 636031	1412 bp distal
Setmar	SET domain without mariner transposase fusion	Intron