rs50208132 SNP Detail

Summary

• ID
  rs50208132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40754004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTCTTTC TTCAAAACAT
  TTTTAGAGGA AAATGACTTA GCCTAGGTCA CTCACATATG GCTCAAAATA AATTTGTAAG
  ATTGGTAGCC CAGGTTAGCC TGGAACTCCT TAGAGTCCAA GAATGGACTG ACTCAACCCC
  AGTGCGTCGC TGTGTCCAAC CTTTAATATC TGTCCGGGCA GCGGGTTGCT GGGAAAGAAG
  R
  AACTAGAACC CAAGGACATG TCCACGCTTG GAAAGCATTT TACCACTTAG GTACATCCCC
  AGGCTTTTTT TACTTTAGAG TCGGTGTTTT CCCTATACAG TTCATCTTAA AGCACCACAC
  ATTAATAGCT GTAAAAAAGG AAAATGGCAC AACGGTGTAC ATGGTGGGCT GGCGGGTTCG
  GGGCTGTTCT AAGGAAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60400518	NES15892869	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50208132					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400518	NES15892869	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40754004 () rs orientation: forward

Symbol	Name	Function Class
4921509J17Rik	RIKEN cDNA 4921509J17 gene	1105 bp downstream
Cpgi13112	CpG island 13112	158 bp proximal
Plk4	polo like kinase 4	459 bp upstream
Rr397650	regulatory region 397650	886 bp downstream
Rr575856	regulatory region 575856	558 bp distal
Rr575857	regulatory region 575857	882 bp distal
Rr575858	regulatory region 575858	within coordinates
Rr575859	regulatory region 575859	540 bp proximal
Tssr28972	transcription start site region 28972	444 bp upstream
Tssr28973	transcription start site region 28973	488 bp upstream
Tssr28974	transcription start site region 28974	1209 bp upstream