rs50206046 SNP Detail

Summary

• ID
  rs50206046
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:90060480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTTATCC AACAATTATT
  TGACTGTGGC ATTTAAAACA ACCTAGTCTT TGAACAATGG TTTGCTTGTT TATTTTAGAA
  ACCTGGTCTC AGTCTGTTAC CCTGGTAGAT TAGCACTCAC TGGTAGCCTC GGCTGGCATT
  GAACTGCAGT AAATCTCCTG ACTCTGCAAT CTGAGTGCTG GGATTGGAGG TAAGAACCAG
  M
  ACATTCATCT TCGTCTTCAT GTATTTAATA ACCCTCTTTA GCCAGTCTCC AGCTCCTGCA
  ACAATGAATA CAAGCATCTT GTCAATTTTA CCCAGTGTTC CATTACTAAC TCTAACCCCA
  GTACCTGACA CACATAGGAA GCAGACATTT GTTAAATGGT AGACACTTTT GTTAAATAAT
  TGACCCATTG AAAATATAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146955487	ENSMUSSNP5578594	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
ss321206786	CHEV_4_89838934	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50206046					SNP	C	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:90060480 () rs orientation: forward

Symbol	Name	Function Class
Rr595232	regulatory region 595232	1027 bp distal
Rr595233	regulatory region 595233	1162 bp distal