rs50204613 SNP Detail

Summary

• ID
  rs50204613
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127646000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAAGCTT CACAGTCCTA
  CAGGGACACA ACTGGAGGAG AACTTTAGGA CCTGTGCCAT TAGCCAACAG CCATGCTGGA
  CGCACTGAGG GGGAACCAAT GTCAGAGCCA GAGCTAGATC CACAAGGATC CACAAGGATC
  CTGAGTCAGA GGAGCAGGAG TTCTAACTGT CAAGCCCGGA TGACGGGGAT AATGTGCAAT
  R
  AGCAGAAACA GTGGCTTTCG ACAGGCAGGC AGATGGCCAG GATGAGACAT GTGTCATGAG
  TTCATTTCAA ATGGCTTTGG TTTGAGGTGC TTCGGGATGT TCACTGCAGG ATGAACTGGA
  AATGTGGCTG GAGTTGAGGA TGTACAGCCA AGTGGGAGGC GAGGCGCAGA CTCAAGCAGG
  CTTGCCAGCT CTGCTCCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873104	ENSMUSSNP2358126	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320957501	CHEV_3_127555269	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50204613					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127646000 () rs orientation: forward

Symbol	Name	Function Class
Rr584881	regulatory region 584881	1877 bp distal
Rr584882	regulatory region 584882	1912 bp distal
Rr584883	regulatory region 584883	341 bp distal
Rr584884	regulatory region 584884	416 bp proximal
Rr584885	regulatory region 584885	1053 bp proximal
Rr584886	regulatory region 584886	1161 bp proximal