rs50204486 SNP Detail

Summary

• ID
  rs50204486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141986672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTTCTTA AAGTGTGGTC
  CAACTAGACT CAAGAACCTA AAATTTAAAC AACTTCAGTG TTTTCCCTTA GAAATGGTCT
  GCTCTCCCTG ACACCAACTT AAACACTTTA CTAACTACTG TAGAACTGCA GTGTAGCATA
  ATGAGAAGCT CTGTAATGCT GGGTAGCCAG AGACTGACAG CTCGTTATAG CCGACCACCA
  Y
  TAGCTACAGT GGTAGACGTT TACTTTGCTA CTGATTTTAC ATTTGACACA ACATATGTTC
  TCTGCCTGAC TCACTGAGAT TACACATTTA GCCAACCCTG GGCTATTTTT ATCTCTGTAT
  TATGCTTAGT AACTTCTGGG TTAACCATTA ATTTTCTGTA ATTATTTCTG ATTTTCTATA
  GTTTGGCTCT GGAAAAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss61087894	NES16611932	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs50204486					SNP	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61087894	NES16611932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141986672 () rs orientation: forward

Symbol	Name	Function Class
Pdlim5	PDZ and LIM domain 5	Intron
Rr398079	regulatory region 398079	1881 bp upstream
Rr586407	regulatory region 586407	within coordinates
Rr586408	regulatory region 586408	1967 bp proximal