rs50203352 SNP Detail

Summary

• ID
  rs50203352
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127647557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACACTT GACCTGGCTG
  CGCAGGGCCC AGAGCTGCAG GTCTAATTAA GGCCTTTGAT ACATTGTGAA TTGAGGTTTT
  GTACAGGTCG AAAGCTTAGT TCTGTTACAA GCACTGGAAC TCCGTGCAGT GTTACCAGAA
  GCATGTGTTG AGGATGCTGT CCTTTTTCTT ACTGCGTGTT TTTGACACCT CTGTTAAAGA
  Y
  TAGGCTGCTG TAGCGAGGCA GCTGGTGGAT ACAGACTGCT ATTCTCAACG GGGTTCTTTT
  GCATTCCTGC CTCTTTTGTG ATTGAAACGA AGTAGGTTTG AAATCCAATC CAGGCAAAGA
  CTGTGTGCTA GCTACAGCTC TAAGAAGTAT TCCCTGTCAG TGTTCTAGAA GGCATCAGGG
  TTGTCCCCAG CAGAGAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135873146	ENSMUSSNP3127043	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50203352					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127647557 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	1898 bp distal
Rr584884	regulatory region 584884	609 bp distal
Rr584885	regulatory region 584885	within coordinates
Rr584886	regulatory region 584886	375 bp distal