rs50203249 SNP Detail

Summary

• ID
  rs50203249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58205080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGT ATATCCGCTG GAATTTTAAG
  R
  ATAAAGAGAT TATTCGGATT CCCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146390670	ENSMUSSNP5208733	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
ss321137340	CHEV_4_58217952	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50203249					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58205080 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14336	CpG island 14336			618 bp proximal
Rr592872	regulatory region 592872			1506 bp proximal
Rr592873	regulatory region 592873			1562 bp proximal
Svep1	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr41870	transcription start site region 41870			1243 bp downstream
Tssr41871	transcription start site region 41871			1268 bp downstream
Tssr41872	transcription start site region 41872			1424 bp downstream
Tssr41873	transcription start site region 41873			1453 bp downstream
Tssr41874	transcription start site region 41874			1478 bp downstream
Tssr41875	transcription start site region 41875			1498 bp downstream
Tssr41876	transcription start site region 41876			1519 bp downstream
Tssr41877	transcription start site region 41877			1559 bp downstream
Tssr41878	transcription start site region 41878			1590 bp downstream
Tssr41879	transcription start site region 41879			1606 bp downstream
Tssr41880	transcription start site region 41880			1688 bp downstream