rs50200538 SNP Detail

Summary

• ID
  rs50200538
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166492966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATACCATCC TGCGATGCTA CCTGTGGCTC CCCGGGGCCC
  TGTCCACTGC TGGACCACGC AGTCCCTCAG CATCCATCAA GTTCCCTCAT CCCAGTAATA
  M
  GAGTAATTAT GACATACATC AAGGATGCAG GAAACAGTAA GCTCATCGCT CCATGGCTTG
  GGCAAACAAA CTCTAGCCAG GCAAGGGCTC TTGAAAGGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148257498	ENSMUSSNP822121	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50200538					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166492966 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570327	regulatory region 570327			199 bp distal
Rr570328	regulatory region 570328			305 bp proximal
Rr570329	regulatory region 570329			467 bp proximal
Rr570330	regulatory region 570330			1737 bp proximal