rs50197875 SNP Detail

Summary

• ID
  rs50197875
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCTGCT GGGGCAGGGG
  GTGGGGTGGG GGAGTGGGGG TGATAGAATC CTCCATTCCT TGTGGTGAAT TTCCCCCAAA
  GTATGTGCCT GCATTTGCAA TGGGGAGTCT TAAAAATAAA AGTAGAATAT CCTAGACCAG
  GGTCAAGTGT GCAGTCTCCA CACTGAGGGA AACAAATAGC CATAGGCGAT AGTCTACATA
  W
  TGAAATCCTG TGGCCAGGTG CTCCAGAGGT TTATCAGAAT GTGATCTGAT TAGGAGAGTC
  AGGGGAAGGA TGTGCTATAA ATCAAGCCCA GAGTCAAATG CTTCTGAGAT TGTCCTACCA
  TCCTAGCAAG GGGAATTTAA TATCGGGCAG TATTTACAGT GCTGCCAACT GACTAACCGA
  GTGGATGGGA AGGCATCTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147079113	ENSMUSSNP1736990	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss320429668	CHEV_2_101479625	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50197875					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469813 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	143 bp proximal
Tssr25364	transcription start site region 25364	634 bp downstream
Tssr25365	transcription start site region 25365	758 bp downstream
Tssr25366	transcription start site region 25366	1799 bp downstream