rs50196715 SNP Detail

Summary

• ID
  rs50196715
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117148902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAGCCC TGATGTCCTC
  AGTGTTTCTC ACTCTTGCTT TCCAAGCTGT TTCTTGCAGC ACAGTGGGCC GCCTCTCTAC
  AGAAAAAGCC ATGGACTTGA TGGAGGTCAG CCCTCAGCTG ACAGTTGGGT CTGTCTTGTC
  AGTTTCAAGG TTCTGGTGTC CAAAGTTAAT CCTTTCTCAC ATAGAAAAAA AAATTACAAG
  R
  CCCGGATGGC ACGGGGGGGG GGGGGGTTCA GTTTTACTCA CTTGCACTCA CTTGCTCAGA
  GGTCATTTTT GTTTTAGAGT TTTAGAGTTT GCTGGAGTGT GATGGTAGCT GCCAGTATTT
  GATTTAAATT TACCTGGGAA ATAAGAAAAG CCCAAAAAAG GTATAAATGA TGTGAATATC
  TCACTCAGAG TCTGGTAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932519	NES16191106	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50196715					SNP	A	A	A	A	A	A	G	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932519	NES16191106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117148902 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637287	regulatory region 637287	1318 bp distal
Rr637288	regulatory region 637288	490 bp proximal
Rr637289	regulatory region 637289	1925 bp proximal
Tssr58391	transcription start site region 58391	1936 bp downstream
Tssr58392	transcription start site region 58392	454 bp downstream
Tssr58393	transcription start site region 58393	435 bp downstream
Tssr58394	transcription start site region 58394	395 bp downstream
Tssr58395	transcription start site region 58395	1551 bp upstream
Tssr58396	transcription start site region 58396	1567 bp upstream
Tssr58397	transcription start site region 58397	1605 bp upstream
Tssr58398	transcription start site region 58398	1631 bp upstream
Tssr58399	transcription start site region 58399	1653 bp upstream
Tssr58400	transcription start site region 58400	1681 bp upstream
Tssr58401	transcription start site region 58401	1717 bp upstream
Tssr58402	transcription start site region 58402	1748 bp upstream
Tssr58403	transcription start site region 58403	1766 bp upstream
Tssr58404	transcription start site region 58404	1785 bp upstream
Tssr58405	transcription start site region 58405	1827 bp upstream
Tssr58406	transcription start site region 58406	1857 bp upstream
Tssr58407	transcription start site region 58407	1888 bp upstream
Tssr58408	transcription start site region 58408	1955 bp upstream
Tssr58409	transcription start site region 58409	1977 bp upstream
Tssr58410	transcription start site region 58410	1999 bp upstream
Tssr62617	transcription start site region 62617	1615 bp downstream
Tssr62618	transcription start site region 62618	1637 bp downstream
Tssr62619	transcription start site region 62619	1673 bp downstream
Tssr62620	transcription start site region 62620	1716 bp downstream
Tssr62621	transcription start site region 62621	1782 bp downstream