rs50194809 SNP Detail

Summary

• ID
  rs50194809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132484894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACGCTTTAA AGTTTTCTAG
  TCGAATTGAA GGCATTTCGG TTCAGTCAGC CTCCAGAAAA TGCAGGAAGC ACCATCGACT
  TACTGTCTTC TCCTTGCAGA GCTGCAACAC GGATGGATGA ATGAATTAGC TACCTGTGGC
  AACCAAAGAG CCTTAAAAGC TAGCCTTAAA ACCAGATGTG CAAGCCCTCT CTCAAGGATA
  R
  CCCTGGCACT CTTGAGGCAG GAGGATTAGG AGTTCAAGGC CATCCTAGGC TACTTTGATG
  ACTTTGGGGC CAGTCTGGGC TACCTGAAAC GATATTACAA ACAAACAACA AACAGAGTTA
  TTTGCTGATC GTGCCAGGAG ATGAGGACTA CTAGAAACTG GGCAAAAGGG AGATAAGATG
  GTGTTGTCCC CCTGAACATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147477925	ENSMUSSNP2091414	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321336230	CHEV_4_132313498	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50194809					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132484894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14971	CpG island 14971	252 bp distal
Gm70165	predicted gene, 70165	619 bp upstream
Rr601063	regulatory region 601063	342 bp distal
Rr601064	regulatory region 601064	68 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	336 bp upstream
Tssr43702	transcription start site region 43702	476 bp upstream
Tssr43703	transcription start site region 43703	431 bp upstream
Tssr43704	transcription start site region 43704	396 bp upstream
Tssr43705	transcription start site region 43705	343 bp upstream
Tssr43706	transcription start site region 43706	324 bp upstream