rs50191993 SNP Detail

Summary

• ID
  rs50191993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135152408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCAAAC TCAGAAATCC
  GCCTGCCTCT GCCTCCAGTA GTGCTGGGTG GGATTAAAGG CGTGTGCCAC CACTGCCCAG
  CAAAATGTGC ATTCTTAGCC AGGTATCGCC CTGACTCAGA GTTCACTAGT TCATTGTTCT
  TCCAGTGTGG TGGGAGGACT GGCTCTGAAC TATGCCTGAC GGTGGCACAC TGAGACTCTC
  Y
  TAAGGCACAG AGAGGGGCCA GCGTGATACA CACTGTGTAT ATAATGTCAC AGGCTCAGGG
  GCCAAAGCTA TCTTTGCTTC CCACAGTGTG AGCGCAGGGA CAGGGTGTGT GCCTACCTTT
  TGCTCTTGGA CCTCAAACAC TGCTTCATGG ACACTGCAAG CAAAGAGTGA GGTGGGCAGG
  TCACTTAGGT CCATCATCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147546754	ENSMUSSNP4013533	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50191993					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135152408 () rs orientation: forward

Symbol	Name	Function Class
Gm69999	predicted gene, 69999	within coordinates
Rcan3	regulator of calcineurin 3	Intron
Rr367746	regulatory region 367746	1596 bp upstream
Rr602028	regulatory region 602028	425 bp proximal
Rr602029	regulatory region 602029	1654 bp proximal