rs50186986 SNP Detail

Summary

• ID
  rs50186986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:63805758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATTCATT TTCTGAACAA
  GATCATAATG CCAGCAGTAA GCAACCCACA TCTTAAAAAG CAACGTCTCT GTTGACAGAG
  AGAACCTTTG CTTCCCTTCA CCGGCATTTA ACACACTAGT TCATTTGGAG AGCATCAGGT
  TCTGTACGTT ATAAACAGGT TGTATGCAGA GTACACAGGA GCTACGATGT CGTCTGCACA
  Y
  TGTGGAAACC CAAGCTTAAT ACAATTGTTT AAAAAAGCCG CACCAGGAAA TAAAGTCTTA
  TTCATATCTT CCTTTTCACA GGATAAAAGG AGGTAACTTG AATGCTCCAA TGAGCAGTTT
  CTCAGCATTA TTTTTCTACC ATGATCAAAA TGATGACAGA AGAGAGAAAA AAGTTATATA
  TTTTTTATTT CATACCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60416440	NES15918971	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50186986					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60416440	NES15918971	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63805758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13219	CpG island 13219	306 bp proximal
Plch1	phospholipase C, eta 1	Intron
Rr577601	regulatory region 577601	850 bp distal
Rr577602	regulatory region 577602	within coordinates
Rr577603	regulatory region 577603	1026 bp proximal
Tssr33440	transcription start site region 33440	1059 bp downstream
Tssr33441	transcription start site region 33441	1073 bp downstream
Tssr33442	transcription start site region 33442	1100 bp downstream