rs50178224 SNP Detail

Summary

• ID
  rs50178224
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121293662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGCCCGTCT CCTCCTCCCT TTTCCTATGG CATGCTGGGA
  TTGCAGACAC GTGCACTACC ACGTCCAGCT TTTATGTGGG TTCTGGGGAT CCAAGCACAG
  R
  TTGTTAAGTT TGCACAGCAC TTGCTTGCGC TCCAGGAGCC ATCTTTCCGT CTCCTGAGGC
  TGTCTATTAT TTGTGCCTCT CTATCAGTTT TACTGAGCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135722464	ENSMUSSNP3230119	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50178224					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121293662 () rs orientation: forward

Symbol	Name	Function Class
Rr584095	regulatory region 584095	128 bp proximal
Rr584096	regulatory region 584096	414 bp proximal
Slc44a3	solute carrier family 44, member 3	Intron