rs50177723 SNP Detail

Summary

• ID
  rs50177723
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153349633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGGTCT AAGGAAGCCA
  AAACCACCTC CAGAGCCCAA ACCAATGCTT CCTTTGTAAA TGGCTCCCTA TTGGGAGCCC
  AGAGAGTCTT CCGGTTCTTT GCAGCTTATC CTCTGTGCAG ATATTTTAAT TAATGTTTAA
  TCTTCCCGTG TTTGTGCCTG GAGGCAAAGC CTGTGAGGGG GCAGAGTTCT CAGTCATAGC
  T
  TCAGACAAGC TGCAAGTTTA ACATTAAACA ACCACAACTC AAATGACCAG CCATACCCTC
  GCCCTCCATC CCTACTGCCA GACGCACAGG GCCACGCAGT GCGCATGCTC TGCAGTTGCT
  CCCTCTCATC CTCCAACTGT TACAATGGTG GGTGTCTATT TCTCCCCCAC CCCCACCCCC
  GTTCCTGGGG AGGGGCTGGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss136110335	ENSMUSSNP742863	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs50177723					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153349633 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587714	regulatory region 587714			within coordinates
Rr587715	regulatory region 587715			1818 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant