rs50176555 SNP Detail

Summary

• ID
  rs50176555
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:62742649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGTGAGT ACAGTTGTCC
  ACGGAATTCA GAAGAGGGCA TCAGATCCTC TGCAGCTAGA CTTATAGGTG ACTGTAAACC
  CCCAACATGG TTTTGGAGAA ATGAACTCAA GTCCTCTGAA AGAGCAATGC ATGCTCTTAA
  CTATGGATTC ATCTCTTCAC CTTCCTTCTG TTTCCTAATT TCATTTTCCA TTCTCCCAAT
  K
  AACTGAAGAG GCAAGTTTTT TCCCCATTTT ACAGATATGG GAACTGAGGC ACAGAAAGGA
  TAAGGTACTT GCCCAGGGTG GTATTGCTAC TAAAGGATGA GACAGAGCAA CTATGCCTTT
  GTGTCATTTT ACCTTCTAAA TGCTACTTGA GTCTGACACA TCAGGCACAG AGTAGGTCCT
  CTGCGAGGCT TTCTGAAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146436401	ENSMUSSNP4874057	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50176555					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:62742649 () rs orientation: forward

Symbol	Name	Function Class
Rr593425	regulatory region 593425	1505 bp distal
Rr593426	regulatory region 593426	1626 bp distal
Rr593427	regulatory region 593427	532 bp distal