rs50176173 SNP Detail

Summary

• ID
  rs50176173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134907233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACG GCCAGAACCC CAGCATGCCT
  Y
  GGGAAGAAAC AGCTCGCCCC TGCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321351100	CHEV_4_134735837	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50176173					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134907233 () rs orientation: forward

Symbol	Name	Function Class
Rr601942	regulatory region 601942	259 bp distal
Rr601943	regulatory region 601943	765 bp distal
Rr601944	regulatory region 601944	1905 bp proximal
Runx3	runt related transcription factor 3	1932 bp downstream