rs50175326 SNP Detail

Summary

• ID
  rs50175326
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTCTGGG TAAAGAGATA
  CCCAGCCCAA GTAATCACGG TTTAGAGGAA GTCAAACAGT ATTTCTTGTC CACACAGCGC
  TTCGTTCATC CATATACTAT CTGTGTCAGT GCTGTGTGGG AAGACTGTCT TACCCTGCAA
  TGTGGATAGC ACTGTAAGAA ATTAAGATGA GAAGACGAAG TCAAAGAAAC CAAGAGAACC
  R
  GAGGAAGGCT ATAGAGTTAA GAACTGGAAA AGAAAAATGA CAAGAATAAC ACCAAATCTG
  TGCCACAGTC TGCTAACCAG CCACCAGTTT CCACCGGGGG TGGGGGGGGG TGGGGGGTGG
  GGGTGGGGGT GGTGGGGGGG CCTGTTGAGA GGGAAGGGTG GTGATTAGCA TAGCAGCAGA
  GTAAAGCCAG CAACTCCATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60431119	NES15934362	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs50175326					SNP	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431119	NES15934362	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	1166 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	1263 bp upstream
Rr367520	regulatory region 367520	1259 bp downstream
Rr582659	regulatory region 582659	1469 bp distal
Rr582660	regulatory region 582660	773 bp distal
Rr582661	regulatory region 582661	131 bp proximal
Tssr34913	transcription start site region 34913	1835 bp upstream
Tssr34914	transcription start site region 34914	1692 bp upstream
Tssr34915	transcription start site region 34915	1471 bp upstream
Tssr34916	transcription start site region 34916	1422 bp upstream
Tssr34917	transcription start site region 34917	1258 bp upstream
Tssr34918	transcription start site region 34918	467 bp downstream