rs50173954 SNP Detail

Summary

• ID
  rs50173954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116287230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TGAGACAGGA
  TTTCTCTGTG TAGCCTTGGC TGTCCTGAAA CTCACTCTGT AGACCAGGCT GGCCTCGAAC
  TCAGAAATCC ACCTGCCTCT GCCTCCCAAG TGCTGGGATT AAAGGCAGGT TGTCATCATG
  CCTGGCCGAT AAGACAGACT TTTAACAATT TATGTTTCAG AATAAGATGA GAGAGCTGGA
  Y
  GCTCATACAC TTACTTAGAC CAAATATTTC TGAAGCTGCT GTACATGACA AGTTTTTATA
  CTCTTCAAAA ATCCCATTTT AAAAGATAAA TGGAGTCTAC AGAATTCCTG GGAACATAAA
  TTTAGGAAGA AGAAAATGAC TAAACACAAG GAAAACTGTC TCCAGAAAAT GGTCAAGAAA
  TACCGAAGAG CCCTCCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437130	NES15943327	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50173954					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437130	NES15943327	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116287230 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583728	regulatory region 583728			1227 bp distal
Rr583729	regulatory region 583729			1916 bp proximal
Rtca	RNA 3'-terminal phosphate cyclase			Intron
				Noncoding-Transcript-Variant