rs50173800 SNP Detail

Summary

• ID
  rs50173800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32586235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA TTAGAAATCT GAAGAATTGA
  R
  CCATGCTGGT TTTAATCTTA AGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss146162354	ENSMUSSNP2331386	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321072247	CHEV_4_32673210	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50173800					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32586235 () rs orientation: forward

Symbol	Name	Function Class
Bach2	BTB and CNC homology, basic leucine zipper transcription factor 2	127 bp downstream
Rr590021	regulatory region 590021	283 bp proximal
Rr590022	regulatory region 590022	553 bp proximal
Rr590023	regulatory region 590023	1098 bp proximal
Rr590024	regulatory region 590024	1422 bp proximal