rs50172636 SNP Detail

Summary

• ID
  rs50172636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37710597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCAGATCA CTCCGCGGCA CCGTGACGGT GAAGAGGAAG
  CATCCGAGCT GCTGCTGAAG GCATGCGCAC TTTACCCATG ACCTGTGCTG TGAGGGGACG
  Y
  TCTGTGGGAA AAAATAATCC CCTGGCTGTG GGAAGATGGC TCAGGCCATA CCCGGGCTTG
  CTCTGCAAGC ATGAGGACTG ACTGGGTTCA ATTTCCGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134810377	ENSMUSSNP3247725	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320711570	CHEV_3_37555370	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs50172636					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37710597 () rs orientation: forward

Symbol	Name	Function Class
Gm46799	predicted gene, 46799	within coordinates
Gm65224	predicted gene, 65224	57 bp upstream
Rr575530	regulatory region 575530	1858 bp distal
Rr575531	regulatory region 575531	1362 bp distal
Rr575532	regulatory region 575532	within coordinates
Rr575533	regulatory region 575533	532 bp proximal
Tssr28919	transcription start site region 28919	1943 bp downstream
Tssr28920	transcription start site region 28920	1670 bp downstream
Tssr28921	transcription start site region 28921	421 bp downstream