rs50172048 SNP Detail

Summary

• ID
  rs50172048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150589749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATGACT CTTGGGGAGA
  AGAAATTATA AAGTATCTTA CTTCCAGATA TAGGAAAACT GCTATATAAA TATGTATTGA
  ATTAAAACTA AATACCAACC AAATGACTAG CTCCAGTTAA AGGTCTTTTT TTTTCTCCTT
  TCCATTTCTA TTAGCCTGTC GTCCTCTCCA CCCCTTGTTT CGTTTGGGCC CGCACAAGAA
  R
  ATCGGCCATC TCAGCATATT TGAATAAGTC TTGTCTCCAA CACAATAATG TTTTTTTTTT
  TTTTTTAAAG ATTTATTTAT TATTTTAAGT ACACTGTAGC TGTCTTCAGA CACACCAGAA
  GAGGGAGTCA GATCTTGTTA CGGATGGTTG TGAGCCACCA TGTGGTTGCT GGGATTTGAA
  CTCTGGACCT TCGGAAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60859594	NES15988837	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50172048					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60859594	NES15988837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150589749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17110	CpG island 17110	493 bp distal
Gm71525	predicted gene, 71525	92 bp downstream
N4bp2l2	NEDD4 binding protein 2-like 2	101 bp upstream
Rr399543	regulatory region 399543	339 bp downstream
Rr625784	regulatory region 625784	1011 bp distal
Rr625785	regulatory region 625785	683 bp distal
Rr625786	regulatory region 625786	675 bp distal
Rr625787	regulatory region 625787	182 bp distal
Rr625788	regulatory region 625788	396 bp distal
Rr625789	regulatory region 625789	111 bp proximal
Tssr49954	transcription start site region 49954	976 bp downstream
Tssr54667	transcription start site region 54667	1058 bp upstream
Tssr54668	transcription start site region 54668	907 bp upstream
Tssr54669	transcription start site region 54669	840 bp upstream
Tssr54670	transcription start site region 54670	678 bp upstream