rs50171573 SNP Detail

Summary

• ID
  rs50171573
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119449579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTA CTCTAGTTGG AGGCTTTTTT
  W
  ATTATATTTG GAGAACTTAT AAAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss147337166	ENSMUSSNP1262928	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		T
ss320476345	CHEV_2_119444834	CHEVERUD	SCREENING_POP	f	SNP			T		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs50171573					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119449579 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12123	CpG island 12123			169 bp distal
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Oip5	Opa interacting protein 5			629 bp upstream
Rr397233	regulatory region 397233			342 bp downstream
Rr563550	regulatory region 563550			790 bp distal
Rr563551	regulatory region 563551			789 bp distal
Rr563552	regulatory region 563552			371 bp distal
Rr563553	regulatory region 563553			864 bp proximal
Rr563554	regulatory region 563554			1832 bp proximal
Tssr19645	transcription start site region 19645			361 bp downstream
Tssr25824	transcription start site region 25824			588 bp upstream