rs50168736 SNP Detail

Summary

• ID
  rs50168736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCACGGG ATTGACTGTG
  TAGCCCAGAC TGGTCTCAAG CCACGTCAGT CCTCCTGCCT CAGCTTCCAT TGGGGGTTCT
  TGCTATAAGC TAAATGTGGA CCCCATCAGA CTTTTACAGC TTGTGGTCTA TCTCAGTCAA
  GGATGAAGCT CTGGTTTGCA TGGTATTAGT GTAGCCATGT TGGATCCTGC AAGGGTCATC
  Y
  CATCATGAAA GGACAGACAA TGAGTGGTTT TGTACACTGA GGTGACATTG TCTACCTTTC
  TGTCTGAGAT CAGCAACCAT CGATTTGTAA GTTGACCAGG TCACCATTCA TGAATGCTCT
  GATAACACGT CAATTTCCAA CACATTTCAC ATCATACTTT TTTTTTCTAA ATACCATCTG
  AGCTGTTGGG TAGAGAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146246411	ENSMUSSNP6827845	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321100053	CHEV_4_44087117	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50168736					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1178 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1478 bp distal
Rr591150	regulatory region 591150	981 bp distal
Rr591151	regulatory region 591151	1248 bp distal
Rr591152	regulatory region 591152	59 bp distal
Tssr41482	transcription start site region 41482	1688 bp upstream
Tssr41483	transcription start site region 41483	1552 bp upstream
Tssr41484	transcription start site region 41484	1514 bp upstream
Tssr41485	transcription start site region 41485	1224 bp upstream