rs50167517 SNP Detail

Summary

• ID
  rs50167517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34502155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCAGTG CTAACAGGTG
  ACAGTTTATA TTTAAGAAGA TTTCATACAA CAAAAGTATC ATTGCATATG AAAAATTAGC
  ATTAGAGAAT ATTTAATAAG AAAATGTGAA ACACTACAGT TTTCTCTCCA CTTGTCACTT
  TGTTTGGCTT TTGTTTGGGT GTGCGTGTGC TGCTCGGGTA GGTGCACACA TATTTGCAGG
  Y
  GTTTAGCTTC ATGAAGGTTA CCTGTGGTAG TAGATGAACT CTGCAGAAGT GACTTAAGTT
  CAGGGTCTCG AGATGAAGAT ATGTGCATCG GAGCCTGGAG ATCAACGCTG GGGTTCCTTG
  GGAGTCTTTC TCCCTTTCTT TTGTTGGGTT TTGTTGTTGC TCTTGAGACA GACTCATTGA
  AACCTGCAGC TTGCTGGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60386488	NES15889316	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T		C	C	T	C		T
ss320701780	CHEV_3_34346928	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50167517					SNP	C	C	T	C	C	C	C	C	C	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60386488	NES15889316	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34502155 () rs orientation: forward

Symbol	Name	Function Class
Gm64637	predicted gene, 64637	within coordinates
Gm64638	predicted gene, 64638	1396 bp upstream
Rr575135	regulatory region 575135	1200 bp distal