rs50165482 SNP Detail

Summary

• ID
  rs50165482
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164659795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAGTGGGC ACCAGAAGCC
  ATGGGCAGTG TGTTGTCCTA AGACACAAGA AGGCGGAGAA GGGTGGGAAC TAAGATTCTT
  TGGTCCTTAC GTGCTGGCCT GGACTGCTCC AAGCCCTTCC TGACCAAAAC TAGAGATGGC
  GCCACCTCTG CACTGTGCTC ATAACAGACA CAGATGTTCT CAGCCCCAGG CCCCTCCACC
  Y
  TGTTATCATA AGACTGACAT ATCCTGTTTT CCTAAACTTG CCCCACAGGG TGGGCGAACT
  GGACCAGCTG GATGAGTGTT TGGAAAAGAG TAGGCGGAGC TCCCAGGCTG CCTGTCAAGC
  TAGAGGCTGA GAGTTCTTTT CCCTTCTCCT TGGGGTTTCA GCTGGGCCAC TCCCTGAGGA
  GGCAGGGGTG TGGCCCATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148232068	ENSMUSSNP956913	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50165482					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164659795 () rs orientation: forward

Symbol	Name	Function Class
Gm75078	predicted gene, 75078	1965 bp downstream
Rr569718	regulatory region 569718	1680 bp distal
Rr569719	regulatory region 569719	1860 bp distal
Rr569720	regulatory region 569720	141 bp distal
Rr569721	regulatory region 569721	within coordinates
Rr569722	regulatory region 569722	55 bp distal
Zswim3	zinc finger SWIM-type containing 3	Intron