rs50164440 SNP Detail

Summary

• ID
  rs50164440
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138132538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTACCAC CACCAGGCAC
  GTGGGCTGGT TGGAATTCCT GGGATTTCCA GGGCTGCCTC CTTGGATCTT TTCTTGCTCT
  GCTGAGCTAT GAGGTTGGTC CCAATCCTTC CTTTGTCCTA AATGTCTTGA ATCCCACCCT
  GAGGCCACCA TTTCTTTCCT CCTCCACAGG GTCTGCCTCT TTTCTTTCTT TATTGCTGTG
  K
  CTCGAGGCTT GGTAGGAAGA GGCAGTTAGC TTTCCTTAGT GCTTTTCTGA TTCCTCGTTC
  TCAGGGTTCT TAGTGGTTTT CTGATGCCTC ATAATTGTCC TCAGGGTTCA TGTAGTGGCT
  GGGTGTGGTG GCATCCTGTC TGTAATGCAT CTTACTCAGG AGGATGAGGC AGCCTGGAGT
  TAGAGGCCAT CCTGGGTTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147644734	ENSMUSSNP1871463	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50164440					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138132538 () rs orientation: forward

Symbol	Name	Function Class
Rr602910	regulatory region 602910	135 bp distal
Rr602911	regulatory region 602911	213 bp distal