rs50163080 SNP Detail

Summary

• ID
  rs50163080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89257983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGGTGA GGTCCAGCCT
  AACCCTTGGA GTCAGCTGGG GTACTGTGGG CCTGCCTTCC CTGGGCCGGA GTGGCTTGCT
  GCCTGTGGAC ACCAAGGAAG GGTGGCCTGC CAGAGGACGA AGGCAGTAAC AGGGAAGGAG
  AGGCCTGTTT GGCCTGGCTC CATACTGGCA GACCAGCCAT CCCTACAACC CATTCCAGTG
  R
  CCTTTGCATG GTTGCTTCCG TCCTTCCCCG AGCCAGAGGA GTCTCAGCTG GGTGGGGTCC
  TCAGGTAGAT CATAATGCTG CCGACCAGCC CTGAGCTGCA CAGCCAGACA CTGACAGCTC
  ACAGGATCAT CTACCCCATA GACAGTCAGT GAAACCCCTC ACAAAGGCGT TACCTCCCTC
  TGACCCAAGA TGGTCCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133371305	ENSMUSSNP7126058	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50163080					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89257983 () rs orientation: forward

Symbol	Name	Function Class
4930512J16Rik	RIKEN cDNA 4930512J16 gene	within coordinates
Rr634089	regulatory region 634089	147 bp distal
Rr634090	regulatory region 634090	515 bp proximal