rs50158163 SNP Detail

Summary

• ID
  rs50158163
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79287129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGCTTC CTTCAGCCCT
  CGAGCTGACG CAGCCACACA ACCACACAGC TCACAGGTGG ACTCACAAGT AGGTGAATTC
  ACAGCGTGAA ACTCAGCGAG CGCTCTGAGC TAAGCAAGAT GTCTTCTGAA AGCATTCCTT
  CTATCATTAA CATTTTGGTA TGTTTAAGAA ACCATGTGAG AAAGATGTTT GATAAACAAA
  R
  CGCCTCAGGG AAAATTGCAA AACAAATTTT CTAACACTGG TTTTTGGTAC AGTATGAATC
  TCAGAATCCA ATTAATTAAA AAACATACTA AAGTCTCTAA ATTGAGCTAC TCTTAAGTTC
  CCATTTCTAC ATGCACCAAA GCGTAGGGAT CTATATTCCA AATTCTTGGT TCCTCTTTGG
  CATTCCTAGG ATTATTTACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135371738	ENSMUSSNP1685856	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50158163					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79287129 () rs orientation: forward

Symbol	Name	Function Class
Rr578508	regulatory region 578508	1394 bp distal
Rr578509	regulatory region 578509	103 bp distal
Rr578510	regulatory region 578510	147 bp proximal
Rr578511	regulatory region 578511	1616 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron