rs50157422 SNP Detail

Summary

• ID
  rs50157422
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:112186441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAACACGGAA AGACATGGAA TGTCTAGCTA GGGCCACACT
  TGCCCACTGA GGTGCAGGGA GAGGAAGAAC AGCAGTGGTG TAAAGTGACA GCAGGATCCT
  G
  CCTCTAGTAT CCTCACTCGT GCAGGCAAAC ACTCTTGGGG AGACCCCAAA ATGGCCAGGA
  TGTGAGGCCA ATGCTTGTTC TGACCCTGCT CCTGTAACA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133558895	ENSMUSSNP4748287	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321908056	CHEV_6_112159474	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50157422					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:112186441 () rs orientation: forward

Symbol	Name	Function Class
1700054K19Rik	RIKEN cDNA 1700054K19 gene	1228 bp upstream
Rr636305	regulatory region 636305	1883 bp distal
Rr636307	regulatory region 636307	538 bp distal
Rr636308	regulatory region 636308	499 bp distal
Rr636309	regulatory region 636309	713 bp proximal
Rr636310	regulatory region 636310	1214 bp proximal
Rr636311	regulatory region 636311	1674 bp proximal