rs50156939 SNP Detail

Summary

• ID
  rs50156939
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:71851273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGCTGGA GTCCTTTAAT
  GGGTACTGTG GCATTGAGTT TGGACATAGG CAGCTCAGAA TGCATAGGGT CATTCCTCCA
  CCCAGTAGGA TTCAGGTGTT CGTGACACTG ACACTTCCAA GGCTGTGTCC ATATGTATGA
  CACTCTTAGG AGCCAACCCT AGCTGGCCTC AAGGTGATGG GCTAGGCCAC TGTCTAGCTC
  S
  TGAAGCTTTG TGTGTACCCC TGGCAGCCTG GGGTATCAGG TGTTACATCT GGACTGGCCT
  TGGCTCAGGA GCCAGTGGCA CACACTTGCC ATTATAGCGC TGATGGAGGC AGAGATGGAG
  GCATCAGGAG TTCAGGGTCC ACCTTTGCAA TGCAGCTTGT GCTCTAGAGT GTGTTTGAGG
  CTAGCCTACA CTACACAGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60631378	NES16279465	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50156939					SNP	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60631378	NES16279465	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71851273 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2310041K03Rik	RIKEN cDNA 2310041K03 gene			1854 bp upstream
Babam1	BRISC and BRCA1 A complex member 1			Intron
				Noncoding-Transcript-Variant
Cpgi20525	CpG island 20525			1480 bp distal
Rr400925	regulatory region 400925			1701 bp downstream
Rr665045	regulatory region 665045			1758 bp distal
Tssr77853	transcription start site region 77853			1738 bp downstream